STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101067437Sarcoglycan, alpha. (432 aa)    
Predicted Functional Partners:
sspn
Sarcospan (Kras oncogene-associated gene).
   
 
 0.818
SGCZ
Sarcoglycan zeta.
   
 0.802
sgcg
Sarcoglycan, gamma.
   
 0.731
sgcd
Sarcoglycan, delta (dystrophin-associated glycoprotein).
   
 0.703
kti12
KTI12 chromatin associated homolog.
     
 0.654
ENSTRUP00000051185
Uncharacterized protein.
     
 0.654
ENSTRUP00000085478
Neuromedin Bb.
     
 0.654
sgcb
Sarcoglycan, beta (dystrophin-associated glycoprotein).
    
 0.638
LOC101078584
Dystroglycan 1.
    
 0.612
DMD
Dystrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.
    
 
 0.577
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.