Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC101069147 | phf5a | ENSTRUP00000022849 | ENSTRUP00000079139 | Splicing factor 3a, subunit 3. | PHD finger protein 5A. | 0.985 |
LOC101069147 | sf3a2 | ENSTRUP00000022849 | ENSTRUP00000022738 | Splicing factor 3a, subunit 3. | Splicing factor 3a, subunit 2. | 0.999 |
LOC101069147 | sf3b1 | ENSTRUP00000022849 | ENSTRUP00000039721 | Splicing factor 3a, subunit 3. | Splicing factor 3b, subunit 1. | 0.990 |
LOC101069147 | sf3b4 | ENSTRUP00000022849 | ENSTRUP00000010718 | Splicing factor 3a, subunit 3. | Splicing factor 3b, subunit 4. | 0.995 |
LOC101069147 | snrpb2 | ENSTRUP00000022849 | ENSTRUP00000022769 | Splicing factor 3a, subunit 3. | Small nuclear ribonucleoprotein polypeptide B2. | 0.941 |
LOC101069147 | snrpc | ENSTRUP00000022849 | ENSTRUP00000071377 | Splicing factor 3a, subunit 3. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] | 0.947 |
LOC101069147 | snrpd1 | ENSTRUP00000022849 | ENSTRUP00000022569 | Splicing factor 3a, subunit 3. | Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. | 0.993 |
LOC101069147 | snrpd2 | ENSTRUP00000022849 | ENSTRUP00000071624 | Splicing factor 3a, subunit 3. | Small nuclear ribonucleoprotein Sm D2. | 0.990 |
LOC101069147 | snrpd3 | ENSTRUP00000022849 | ENSTRUP00000072646 | Splicing factor 3a, subunit 3. | Small nuclear ribonucleoprotein Sm D3. | 0.974 |
LOC101069147 | snrpg | ENSTRUP00000022849 | ENSTRUP00000009580 | Splicing factor 3a, subunit 3. | Small nuclear ribonucleoprotein G. | 0.981 |
phf5a | LOC101069147 | ENSTRUP00000079139 | ENSTRUP00000022849 | PHD finger protein 5A. | Splicing factor 3a, subunit 3. | 0.985 |
phf5a | sf3a2 | ENSTRUP00000079139 | ENSTRUP00000022738 | PHD finger protein 5A. | Splicing factor 3a, subunit 2. | 0.993 |
phf5a | sf3b1 | ENSTRUP00000079139 | ENSTRUP00000039721 | PHD finger protein 5A. | Splicing factor 3b, subunit 1. | 0.999 |
phf5a | sf3b4 | ENSTRUP00000079139 | ENSTRUP00000010718 | PHD finger protein 5A. | Splicing factor 3b, subunit 4. | 0.999 |
phf5a | snrpb2 | ENSTRUP00000079139 | ENSTRUP00000022769 | PHD finger protein 5A. | Small nuclear ribonucleoprotein polypeptide B2. | 0.963 |
phf5a | snrpc | ENSTRUP00000079139 | ENSTRUP00000071377 | PHD finger protein 5A. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] | 0.916 |
phf5a | snrpd1 | ENSTRUP00000079139 | ENSTRUP00000022569 | PHD finger protein 5A. | Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. | 0.971 |
phf5a | snrpd2 | ENSTRUP00000079139 | ENSTRUP00000071624 | PHD finger protein 5A. | Small nuclear ribonucleoprotein Sm D2. | 0.981 |
phf5a | snrpd3 | ENSTRUP00000079139 | ENSTRUP00000072646 | PHD finger protein 5A. | Small nuclear ribonucleoprotein Sm D3. | 0.969 |
phf5a | snrpg | ENSTRUP00000079139 | ENSTRUP00000009580 | PHD finger protein 5A. | Small nuclear ribonucleoprotein G. | 0.996 |
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