Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GGA1Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (678 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.857
igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.822
sorl1
Fibronectin type-III domain-containing protein.
    
 
 0.804
LOC101073601
Uncharacterized protein.
   
 0.786
LOC101069905
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.786
LOC101066679
Uncharacterized protein.
   
 0.769
LOC101073281
Sortilin.
    
 
 0.758
LOC101078112
Sortilin.
    
 
 0.725
bace2
Beta-secretase 2; Belongs to the peptidase A1 family.
    
 0.678
bace1
Beta-secretase 1; Belongs to the peptidase A1 family.
    
 0.678
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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