Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101064114LIM domain only 1. (157 aa)    
Predicted Functional Partners:
ldb2
LIM domain binding 2a.
    
 0.852
LOC101073193
LIM domain binding 1a.
    
 0.852
LOC101073193-2
LIM domain-binding protein 1.
    
 0.852
ldb1
LIM domain binding 1a.
    
 0.852
LOC101065935
T-cell acute lymphocytic leukemia protein 1; Transcription factor that plays a pivotal role in hemopoietic and endothelial development.
    
 0.840
ENSTRUP00000081256
T-cell acute lymphocytic leukemia protein 1.
    
 0.840
lhx2
LIM homeobox 2b.
   
 
 0.717
lhx9
LIM homeobox 9.
   
 
 0.717
gata3
GATA binding protein 3.
    
 0.702
LOC101069919
GATA binding protein 1a.
    
 0.659
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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