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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101069147Splicing factor 3a, subunit 3. (501 aa)    
Predicted Functional Partners:
sf3a1
Splicing factor 3a, subunit 1.
   
 0.999
sf3a2
Splicing factor 3a, subunit 2.
    
 0.999
sf3b4
Splicing factor 3b, subunit 4.
    
 0.995
sf3b2
Splicing factor 3b, subunit 2.
   
 0.995
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.994
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.993
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.992
sf3b1
Splicing factor 3b, subunit 1.
   
 0.990
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.990
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.988
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.