STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmc1COX assembly mitochondrial protein. (106 aa)    
Predicted Functional Partners:
LOC101061764
Cytochrome C oxidase assembly factor 3a.
   
 0.976
smim20
Small integral membrane protein 20.
   
 
 0.947
LOC101074563
Surfeit locus protein 1; May play a role in mitochondrial respiratory chain complex IV assembly. Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
   
 
 0.941
COX14
Cytochrome c oxidase assembly factor COX14.
    
 0.919
azi2
5-azacytidine induced 2.
      
 0.891
ENSTRUP00000049598
Cytochrome c oxidase copper chaperone COX17.
   
 
 0.837
LOC101077828
Coiled-coil_56 domain-containing protein.
   
 0.815
LOC101063412
Cytochrome C oxidase assembly factor 5.
   
 
 0.814
pum1
Pumilio RNA-binding family member 1.
    
   0.702
pum2
Pumilio RNA-binding family member 2.
    
   0.702
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.