Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnd1Uncharacterized protein. (362 aa)    
Predicted Functional Partners:
dazl
Deleted in azoospermia-like.
   
 0.923
piwil1
Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.
      
 0.819
ddx4
Probable ATP-dependent RNA helicase DDX4.
   
 0.767
hnrnpc
RRM domain-containing protein.
   
 0.726
ybx1
Y box binding protein 1.
   
 0.712
Nanos3
Nanos homolog 3.
    
 
 0.704
LOC101066426
Tudor domain containing 7 b.
   
 
 0.700
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.700
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.693
LOC101076991
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.693
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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