STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr53WD repeat domain 53. (382 aa)    
Predicted Functional Partners:
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.962
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.948
prpf8
Pre-mRNA processing factor 8.
   
 0.943
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.943
ENSTRUP00000079148
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
   
 0.943
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 0.942
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.928
SART1
Squamous cell carcinoma antigen recognised by cytotoxic T lymphocytes.
   
 0.927
lsm8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.919
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.916
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.