STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
raver1Ribonucleoprotein, PTB-binding 1. (732 aa)    
Predicted Functional Partners:
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.700
LOC115247179
Uncharacterized protein.
   
 0.643
ptbp1
Polypyrimidine tract binding protein 1a.
   
 0.643
PTBP3
Polypyrimidine tract binding protein 3.
   
 0.643
prpf4b
Pre-mRNA processing factor 4Bb.
   
  
 0.589
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.589
LOC101076991
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.589
hnrnpc
RRM domain-containing protein.
    
 0.568
efhb
Uncharacterized protein.
   
  
 0.554
YBX2
Y-box binding protein 2.
    
 0.542
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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