Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LOC101071689Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2a. (247 aa)    
Predicted Functional Partners:
a1cf
Apobec1 complementation factor.
     
 0.715
rbm47
RNA binding motif protein 47.
     
 0.681
LOC101073019
Myozenin 2b.
   
    0.639
H2TAS4_TAKRU
Myozenin 2a.
   
    0.639
smyd1
SET and MYND domain containing 1b.
   
    0.612
LOC101065744
Uncharacterized protein.
   
    0.612
GADD45B
Growth arrest and DNA damage inducible beta.
      
 0.581
srp19
Signal recognition particle 19.
      
 0.581
GADD45B-2
Growth arrest and DNA damage inducible beta.
      
 0.579
LOC105417876
Methyl-CpG binding domain protein 1b.
      
 0.540
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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