STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078234Neuronal pentraxin 2a. (449 aa)    
Predicted Functional Partners:
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 
 0.730
TAFA5
Chemokine-like protein TAFA-5 isoform X1.
      
 0.705
rnf2
Ring finger protein 2.
    
 0.641
pcsk1
Proprotein convertase subtilisin/kexin type 1; Belongs to the peptidase S8 family.
      
 0.615
LOC101075296
Parvalbumin-7-like.
     
 0.612
npas4
BHLH domain-containing protein.
      
 0.582
LOC115249652
Neuronal PAS domain-containing protein 4-like.
      
 0.582
ENSTRUP00000056072
Uncharacterized protein.
      
 0.546
tmem25
Ig-like domain-containing protein.
   
  
 0.524
elovl5
Elongation of very long chain fatty acids protein.
      
 0.513
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.