STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074491Matrix metallopeptidase 15a. (396 aa)    
Predicted Functional Partners:
utp11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.967
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.959
wdr46
WD repeat domain 46.
   
 0.956
utp18
UTP18 small subunit processome component.
   
 0.954
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
   
 0.953
utp3
UTP3 small subunit processome component.
   
 0.949
rrp7a
Ribosomal RNA processing 7 homolog A.
   
 0.948
bms1
BMS1 ribosome biogenesis factor.
   
 0.944
ngdn
Neuroguidin, EIF4E binding protein.
   
 0.944
LOC101072761
UTP14C small subunit processome component.
   
 0.943
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.