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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074491Matrix metallopeptidase 15a. (396 aa)    
Predicted Functional Partners:
utp11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.972
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.963
wdr46
WD repeat domain 46.
   
 0.962
utp3
UTP3 small subunit processome component.
   
 0.960
rrp7a
Ribosomal RNA processing 7 homolog A.
   
 0.958
utp18
UTP18 small subunit processome component.
   
 0.954
ngdn
Neuroguidin, EIF4E binding protein.
   
 0.952
utp23
UTP23 small subunit processome component.
   
 0.952
LOC101072761
UTP14C small subunit processome component.
   
 0.951
pdcd11
Programmed cell death 11.
   
 0.945
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.