LOC101062733 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101062733

Zmp:0000000662. (724 aa)

Predicted Functional Partners:

derl2

0.835

erlec1

0.768

os9

0.768

KATNAL2

0.751

ENSTRUP00000070399

0.751

spata5l1

0.743

vcp

0.743

SPATA5

0.743

LOC101077113

0.710

LOC105417910

0.710

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000070399	KATNAL2	ENSTRUP00000070399	ENSTRUP00000006052	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	0.714
ENSTRUP00000070399	LOC101062733	ENSTRUP00000070399	ENSTRUP00000023024	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Zmp:0000000662.	0.751
ENSTRUP00000070399	LOC101077113	ENSTRUP00000070399	ENSTRUP00000004620	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Si:dkey-24p1.6.	0.465
ENSTRUP00000070399	LOC105417910	ENSTRUP00000070399	ENSTRUP00000034263	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Uncharacterized protein.	0.465
ENSTRUP00000070399	derl2	ENSTRUP00000070399	ENSTRUP00000049739	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Derlin-2/3.	0.969
ENSTRUP00000070399	erlec1	ENSTRUP00000070399	ENSTRUP00000041929	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Endoplasmic reticulum lectin 1.	0.695
ENSTRUP00000070399	os9	ENSTRUP00000070399	ENSTRUP00000075968	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	OS9 endoplasmic reticulum lectin.	0.695
ENSTRUP00000070399	vcp	ENSTRUP00000070399	ENSTRUP00000045516	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Valosin containing protein; Belongs to the AAA ATPase family.	0.416
KATNAL2	ENSTRUP00000070399	ENSTRUP00000006052	ENSTRUP00000070399	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	0.714
KATNAL2	LOC101062733	ENSTRUP00000006052	ENSTRUP00000023024	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Zmp:0000000662.	0.751
KATNAL2	LOC101077113	ENSTRUP00000006052	ENSTRUP00000004620	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Si:dkey-24p1.6.	0.465
KATNAL2	LOC105417910	ENSTRUP00000006052	ENSTRUP00000034263	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.465
KATNAL2	derl2	ENSTRUP00000006052	ENSTRUP00000049739	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Derlin-2/3.	0.969
KATNAL2	erlec1	ENSTRUP00000006052	ENSTRUP00000041929	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Endoplasmic reticulum lectin 1.	0.695
KATNAL2	os9	ENSTRUP00000006052	ENSTRUP00000075968	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	OS9 endoplasmic reticulum lectin.	0.695
KATNAL2	vcp	ENSTRUP00000006052	ENSTRUP00000045516	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Valosin containing protein; Belongs to the AAA ATPase family.	0.415
LOC101062733	ENSTRUP00000070399	ENSTRUP00000023024	ENSTRUP00000070399	Zmp:0000000662.	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	0.751
LOC101062733	KATNAL2	ENSTRUP00000023024	ENSTRUP00000006052	Zmp:0000000662.	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	0.751
LOC101062733	LOC101077113	ENSTRUP00000023024	ENSTRUP00000004620	Zmp:0000000662.	Si:dkey-24p1.6.	0.710
LOC101062733	LOC105417910	ENSTRUP00000023024	ENSTRUP00000034263	Zmp:0000000662.	Uncharacterized protein.	0.710