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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105416955Uncharacterized protein. (802 aa)    
Predicted Functional Partners:
ENSTRUP00000050101
VWFD domain-containing protein.
 
 
 0.923
ENSTRUP00000065822
LOW QUALITY PROTEIN: mucin-5B-like.
 
     
0.899
ENSTRUP00000076378
annotation not available
 
     
0.899
ENSTRUP00000033814
annotation not available
 
 
0.894
MSL3
MSL complex subunit 3.
    
 0.757
LOC101071026
MSL complex subunit 2.
    
 0.631
MSL2
MSL complex subunit 2.
    
 0.631
maml1
Mastermind-like transcriptional coactivator 1.
   
 0.595
rbpjl
Recombining binding protein suppressor of hairless-like protein isoform X1.
   
 0.595
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.586
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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