Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
esrp1Epithelial splicing regulatory protein 1. (781 aa)    
Predicted Functional Partners:
LOC101072423
RNA binding protein, mRNA processing factor.
    
 
 0.811
rbpms2
RNA binding protein, mRNA processing factor 2b.
    
 0.773
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
     
 0.565
Srsf10
RRM domain-containing protein.
    
 0.564
bsnd
Uncharacterized protein.
      
 0.515
LOC101077614
TPR_REGION domain-containing protein.
    
   0.505
qki
QKI, KH domain containing, RNA binding a.
    
 0.498
LOC101065787
QKI, KH domain containing, RNA binding 2.
    
 0.498
polr2k
Uncharacterized protein.
     
 0.487
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.484
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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