STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101073904Tight junction protein 1b; Belongs to the MAGUK family. (1708 aa)    
Predicted Functional Partners:
gja1
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
   
 0.898
LOC101066033
Occludin a.
   
 
 0.808
yap1
Yes-associated protein 1.
   
 0.726
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.680
LOC101076764
Uncharacterized protein.
     
 0.658
f11r
F11 receptor, tandem duplicate 1.
   
 0.631
LOC101077970
Tight junction protein 2b (zona occludens 2); Belongs to the MAGUK family.
    
 
0.627
LOC101076035
Tight junction protein 2a (zona occludens 2); Belongs to the MAGUK family.
    
 
0.627
LOC101065380
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
 
 0.614
LOC101070964
Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.609
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.