STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101067663Uncharacterized protein. (917 aa)    
Predicted Functional Partners:
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.668
LOC101063944
PR domain containing 8.
    
 
 0.659
plod1
Fe2OG dioxygenase domain-containing protein.
     
 0.658
plod2
Fe2OG dioxygenase domain-containing protein.
     
 0.658
LOC101061441
CXXC finger protein 1b.
     
 0.649
H2SES2_TAKRU
SPO11 initiator of meiotic double stranded breaks.
     
 0.614
rai1
Retinoic acid induced 1.
  
 0.597
sh3rf3
SH3 domain containing ring finger 3.
   
 0.548
HDAC1
Histone deacetylase 1.
    
 0.540
HDAC3
Histone deacetylase 3.
    
 0.540
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.