STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101079511RBR-type E3 ubiquitin transferase. (310 aa)    
Predicted Functional Partners:
sh3bgrl
SH3 domain binding glutamate-rich protein like.
      
 0.711
ENSTRUP00000085001
annotation not available
   
 0.663
rps27a
Ribosomal protein S27a.
    
  0.632
LOC101069187
Uncharacterized protein.
      
 0.629
LOC101064015
Transmembrane protein 150A-like isoform X1.
      
 0.629
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.627
RNF223
Ring finger protein 223.
    
 0.598
zfand4
Zinc finger, AN1-type domain 4.
    
 0.554
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.553
znf451
Zinc finger protein 451.
    
 0.517
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.