Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rybpRING1 and YY1 binding protein b. (288 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
    
 0.962
bmi1
Bmi1 polycomb ring finger oncogene 1a.
    
 0.914
pcgf6
Polycomb group ring finger 6.
    
 0.908
PCGF3
Uncharacterized protein.
    
 0.903
LOC101063077
THAP-type domain-containing protein.
   
 0.895
ENSTRUP00000087645
E2F_CC-MB domain-containing protein.
   
 0.895
pcgf1
Polycomb group ring finger 1.
    
 0.894
auts2
Activator of transcription and developmental regulator AUTS2 a.
    
 0.884
LOC101068653
Polycomb group ring finger 5a.
    
 0.870
LOC101068653-2
Polycomb group ring finger 5a.
    
 0.870
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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