Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrtm1Leucine rich repeats and transmembrane domains 1. (384 aa)    
Predicted Functional Partners:
LOC101077456
Hephaestin-like 1b; Belongs to the multicopper oxidase family.
     
 0.642
tmem220
Transmembrane protein 220.
      
 0.500
H2SJJ2_TAKRU
Basic helix-loop-helix family, member e23.
      
 0.492
pank1
Pantothenate kinase 2.
    
 
 0.437
actr8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 
 0.412
ENSTRUP00000058401
Homeobox protein SEBOX.
    
 
 0.409
ENSTRUP00000060106
annotation not available
    
 
 0.409
cntn2
Contactin 2.
    
 0.404
LOC101062272
Ceruloplasmin; Belongs to the multicopper oxidase family.
     
 0.401
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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