STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppp1r42Protein phosphatase 1, regulatory subunit 42. (276 aa)    
Predicted Functional Partners:
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
 0.956
COPS6
COP9 signalosome subunit 6.
   
 0.955
cops2
COP9 signalosome subunit 2.
   
 0.950
cops3
COP9 signalosome subunit 3.
   
 0.940
cops8
COP9 signalosome subunit 8.
   
 0.936
gps1
G protein pathway suppressor 1.
   
 0.935
cops7a
COP9 constitutive photomorphogenic homolog subunit 7A.
   
 0.931
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.925
ddb1
Damage-specific DNA binding protein 1.
    
 0.888
psmd12
Proteasome 26S subunit, non-ATPase 12.
   
 0.880
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.