ppp1r42 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ppp1r42

Protein phosphatase 1, regulatory subunit 42. (276 aa)

Predicted Functional Partners:

cops4

0.979

cops2

0.977

COPS6

0.977

cops8

0.973

cops3

0.973

gps1

0.972

cops7a

0.971

fau

0.932

cul2

0.919

LOC101077379

0.903

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COPS6	LOC101077379	ENSTRUP00000065015	ENSTRUP00000072546	COP9 signalosome subunit 6.	NEDD8 ubiquitin like modifier.	0.954
COPS6	cops2	ENSTRUP00000065015	ENSTRUP00000043337	COP9 signalosome subunit 6.	COP9 signalosome subunit 2.	0.999
COPS6	cops3	ENSTRUP00000065015	ENSTRUP00000082863	COP9 signalosome subunit 6.	COP9 signalosome subunit 3.	0.999
COPS6	cops4	ENSTRUP00000065015	ENSTRUP00000053695	COP9 signalosome subunit 6.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.999
COPS6	cops7a	ENSTRUP00000065015	ENSTRUP00000027578	COP9 signalosome subunit 6.	COP9 constitutive photomorphogenic homolog subunit 7A.	0.996
COPS6	cops8	ENSTRUP00000065015	ENSTRUP00000059629	COP9 signalosome subunit 6.	COP9 signalosome subunit 8.	0.998
COPS6	cul2	ENSTRUP00000065015	ENSTRUP00000080938	COP9 signalosome subunit 6.	Cullin 2; Belongs to the cullin family.	0.913
COPS6	fau	ENSTRUP00000065015	ENSTRUP00000029977	COP9 signalosome subunit 6.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.927
COPS6	gps1	ENSTRUP00000065015	ENSTRUP00000073121	COP9 signalosome subunit 6.	G protein pathway suppressor 1.	0.999
COPS6	ppp1r42	ENSTRUP00000065015	ENSTRUP00000023583	COP9 signalosome subunit 6.	Protein phosphatase 1, regulatory subunit 42.	0.977
LOC101077379	COPS6	ENSTRUP00000072546	ENSTRUP00000065015	NEDD8 ubiquitin like modifier.	COP9 signalosome subunit 6.	0.954
LOC101077379	cops2	ENSTRUP00000072546	ENSTRUP00000043337	NEDD8 ubiquitin like modifier.	COP9 signalosome subunit 2.	0.841
LOC101077379	cops3	ENSTRUP00000072546	ENSTRUP00000082863	NEDD8 ubiquitin like modifier.	COP9 signalosome subunit 3.	0.875
LOC101077379	cops4	ENSTRUP00000072546	ENSTRUP00000053695	NEDD8 ubiquitin like modifier.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.910
LOC101077379	cops7a	ENSTRUP00000072546	ENSTRUP00000027578	NEDD8 ubiquitin like modifier.	COP9 constitutive photomorphogenic homolog subunit 7A.	0.883
LOC101077379	cops8	ENSTRUP00000072546	ENSTRUP00000059629	NEDD8 ubiquitin like modifier.	COP9 signalosome subunit 8.	0.915
LOC101077379	cul2	ENSTRUP00000072546	ENSTRUP00000080938	NEDD8 ubiquitin like modifier.	Cullin 2; Belongs to the cullin family.	0.949
LOC101077379	fau	ENSTRUP00000072546	ENSTRUP00000029977	NEDD8 ubiquitin like modifier.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.840
LOC101077379	gps1	ENSTRUP00000072546	ENSTRUP00000073121	NEDD8 ubiquitin like modifier.	G protein pathway suppressor 1.	0.927
LOC101077379	ppp1r42	ENSTRUP00000072546	ENSTRUP00000023583	NEDD8 ubiquitin like modifier.	Protein phosphatase 1, regulatory subunit 42.	0.903