Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nkx1-1NK1 transcription factor related 2-like,b. (393 aa)    
Predicted Functional Partners:
creb3l1
cAMP responsive element binding protein 3-like 1.
      
 0.891
diras1
DIRAS family, GTP-binding RAS-like 1b.
     
 0.876
lcat
Lecithin-cholesterol acyltransferase.
      
 0.631
LOC101062766
Zgc:103681.
      
 0.555
tmem120a
Transmembrane protein 120A.
      
 0.555
tmem120b
Transmembrane protein 120B.
      
 0.555
p2ry11
Purinergic receptor P2Y11; Belongs to the G-protein coupled receptor 1 family.
      
 0.549
ankk1
Ankyrin repeat and kinase domain containing 1.
      
 0.549
ppan
Peter pan homolog.
      
 0.549
LOC101074430
Tyrosine-protein kinase receptor.
    
 
 0.531
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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