STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uvssaUV-stimulated scaffold protein A. (730 aa)    
Predicted Functional Partners:
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
    
 0.980
ercc8
Excision repair cross-complementation group 8.
    
 
 0.957
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.897
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 
 0.889
ercc6
Excision repair cross-complementation group 6.
    
 
 0.877
usp40
Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family.
    
 0.836
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.794
wdr61
WD repeat domain 61.
    
 
 0.722
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.716
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
    
 
 0.668
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.