Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sorcs2Sortilin-related VPS10 domain containing receptor 2. (1117 aa)    
Predicted Functional Partners:
LOC101078112
Sortilin.
    
 
 0.718
LOC101073281
Sortilin.
    
 
 0.718
aplp1
Amyloid beta (A4) precursor-like protein 1.
    
 0.609
LOC101078809
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.587
LOC101078809-2
VPS35 retromer complex component.
    
 
 0.587
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
     
 0.517
vps26b
VPS26, retromer complex component B.
    
 
 0.509
vps26a
VPS26, retromer complex component A.
    
 
 0.509
LOC101067116
Uncharacterized protein.
    
 
 0.509
igf2r
Insulin-like growth factor 2 receptor.
    
 0.476
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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