abcg5 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

abcg5

ATP-binding cassette, sub-family G (WHITE), member 5. (643 aa)

Predicted Functional Partners:

abcg8

0.999

ENSTRUP00000084559

0.807

abcg2

0.804

LOC101062096

0.800

LOC101073042

0.776

LOC101072243

0.776

LOC101068857

0.776

abcg4

0.776

LOC101069556

0.695

hmgcr

0.695

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000084559	abcg5	ENSTRUP00000084559	ENSTRUP00000023704	ATP-binding cassette, subfamily G (WHITE), member 1.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.807
ENSTRUP00000084559	hmgcr	ENSTRUP00000084559	ENSTRUP00000033546	ATP-binding cassette, subfamily G (WHITE), member 1.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.453
LOC101062096	LOC101068857	ENSTRUP00000025938	ENSTRUP00000061225	ATP-binding cassette, sub-family F (GCN20), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 2b.	0.475
LOC101062096	abcg2	ENSTRUP00000025938	ENSTRUP00000064859	ATP-binding cassette, sub-family F (GCN20), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 2d.	0.572
LOC101062096	abcg5	ENSTRUP00000025938	ENSTRUP00000023704	ATP-binding cassette, sub-family F (GCN20), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.800
LOC101062096	abcg8	ENSTRUP00000025938	ENSTRUP00000071734	ATP-binding cassette, sub-family F (GCN20), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 8.	0.477
LOC101068857	LOC101062096	ENSTRUP00000061225	ENSTRUP00000025938	ATP-binding cassette, sub-family G (WHITE), member 2b.	ATP-binding cassette, sub-family F (GCN20), member 2b.	0.475
LOC101068857	LOC101072243	ENSTRUP00000061225	ENSTRUP00000041292	ATP-binding cassette, sub-family G (WHITE), member 2b.	ABC transporter domain-containing protein.	0.903
LOC101068857	abcg2	ENSTRUP00000061225	ENSTRUP00000064859	ATP-binding cassette, sub-family G (WHITE), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 2d.	0.904
LOC101068857	abcg5	ENSTRUP00000061225	ENSTRUP00000023704	ATP-binding cassette, sub-family G (WHITE), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.776
LOC101069556	abcg5	ENSTRUP00000027981	ENSTRUP00000023704	Cytochrome P450, family 7, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.695
LOC101069556	abcg8	ENSTRUP00000027981	ENSTRUP00000071734	Cytochrome P450, family 7, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.	ATP-binding cassette, sub-family G (WHITE), member 8.	0.644
LOC101069556	hmgcr	ENSTRUP00000027981	ENSTRUP00000033546	Cytochrome P450, family 7, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.810
LOC101072243	LOC101068857	ENSTRUP00000041292	ENSTRUP00000061225	ABC transporter domain-containing protein.	ATP-binding cassette, sub-family G (WHITE), member 2b.	0.903
LOC101072243	abcg2	ENSTRUP00000041292	ENSTRUP00000064859	ABC transporter domain-containing protein.	ATP-binding cassette, sub-family G (WHITE), member 2d.	0.901
LOC101072243	abcg5	ENSTRUP00000041292	ENSTRUP00000023704	ABC transporter domain-containing protein.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.776
LOC101073042	abcg4	ENSTRUP00000010849	ENSTRUP00000087724	ATP-binding cassette, sub-family G (WHITE), member 4b.	ATP-binding cassette, sub-family G (WHITE), member 4a.	0.900
LOC101073042	abcg5	ENSTRUP00000010849	ENSTRUP00000023704	ATP-binding cassette, sub-family G (WHITE), member 4b.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.776
abcg2	LOC101062096	ENSTRUP00000064859	ENSTRUP00000025938	ATP-binding cassette, sub-family G (WHITE), member 2d.	ATP-binding cassette, sub-family F (GCN20), member 2b.	0.572
abcg2	LOC101068857	ENSTRUP00000064859	ENSTRUP00000061225	ATP-binding cassette, sub-family G (WHITE), member 2d.	ATP-binding cassette, sub-family G (WHITE), member 2b.	0.904