Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FEM1AFem-1 homolog A. (617 aa)    
Predicted Functional Partners:
cul2
Cullin 2; Belongs to the cullin family.
    
 0.935
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.915
LOC101070508
Elongin-B isoform X1.
    
 0.827
LOC101068670
Ubiquitin-like domain-containing protein.
    
 0.827
COPS6
COP9 signalosome subunit 6.
    
 0.795
ppm1e
Protein phosphatase, Mg2+/Mn2+ dependent, 1E.
   
 
 0.794
cops2
COP9 signalosome subunit 2.
    
  0.789
cops3
COP9 signalosome subunit 3.
    
 0.787
LOC101077379
NEDD8 ubiquitin like modifier.
    
 0.722
H2SH60_TAKRU
Ubiquitin-like domain-containing protein.
    
 0.722
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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