STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101070744Grancalcin. (337 aa)    
Predicted Functional Partners:
nudcd1
Uncharacterized protein.
    
   0.624
ggact
Gamma-glutamylamine cyclotransferase, tandem duplicate 3.
   
  
 0.594
pdcd6ip
Programmed cell death 6 interacting protein.
    
 
 0.514
LOC101062466
Electron transfer flavoprotein subunit beta.
      
 0.513
H2UMK9_TAKRU
Uncharacterized protein.
   
 0.507
LOC101070654
Annexin.
   
 
 0.497
sec31a
SEC31 homolog A, COPII coat complex component.
    
 
 0.486
LOC101073109
Uncharacterized protein.
    
 
 0.486
LOC101067541
Ankyrin repeat domain 40.
    
 
 0.486
trpm7
Transient receptor potential cation channel, subfamily M, member 7.
      
 0.473
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.