LOC101077966 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101077966

Nuclear receptor coactivator 3. (1526 aa)

Predicted Functional Partners:

LOC101073984

0.863

nr1h3

0.838

LOC101073582

0.768

nr1h4

0.768

esr1

0.746

LOC101067852

0.739

LOC101070643

0.727

ENSTRUP00000064066

0.727

LOC115248448

0.727

carm1

0.725

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000064066	LOC101067852	ENSTRUP00000064066	ENSTRUP00000012893	E1A binding protein p300 b.	Uncharacterized protein.	0.773
ENSTRUP00000064066	LOC101073582	ENSTRUP00000064066	ENSTRUP00000020498	E1A binding protein p300 b.	Nuclear receptor subfamily 1, group H, member 5.	0.499
ENSTRUP00000064066	LOC101073984	ENSTRUP00000064066	ENSTRUP00000033022	E1A binding protein p300 b.	CREB binding protein a.	0.991
ENSTRUP00000064066	LOC101077966	ENSTRUP00000064066	ENSTRUP00000023904	E1A binding protein p300 b.	Nuclear receptor coactivator 3.	0.727
ENSTRUP00000064066	carm1	ENSTRUP00000064066	ENSTRUP00000050178	E1A binding protein p300 b.	Coactivator-associated arginine methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.885
ENSTRUP00000064066	esr1	ENSTRUP00000064066	ENSTRUP00000078857	E1A binding protein p300 b.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.786
ENSTRUP00000064066	nr1h3	ENSTRUP00000064066	ENSTRUP00000041937	E1A binding protein p300 b.	Nuclear receptor subfamily 1, group H, member 3.	0.510
ENSTRUP00000064066	nr1h4	ENSTRUP00000064066	ENSTRUP00000085628	E1A binding protein p300 b.	Nuclear receptor subfamily 1, group H, member 4.	0.499
LOC101067852	ENSTRUP00000064066	ENSTRUP00000012893	ENSTRUP00000064066	Uncharacterized protein.	E1A binding protein p300 b.	0.773
LOC101067852	LOC101070643	ENSTRUP00000012893	ENSTRUP00000043685	Uncharacterized protein.	E1A binding protein p300 a.	0.773
LOC101067852	LOC101073984	ENSTRUP00000012893	ENSTRUP00000033022	Uncharacterized protein.	CREB binding protein a.	0.900
LOC101067852	LOC101077966	ENSTRUP00000012893	ENSTRUP00000023904	Uncharacterized protein.	Nuclear receptor coactivator 3.	0.739
LOC101067852	LOC115248448	ENSTRUP00000012893	ENSTRUP00000069118	Uncharacterized protein.	E1A binding protein p300 b.	0.773
LOC101067852	esr1	ENSTRUP00000012893	ENSTRUP00000078857	Uncharacterized protein.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.525
LOC101070643	LOC101067852	ENSTRUP00000043685	ENSTRUP00000012893	E1A binding protein p300 a.	Uncharacterized protein.	0.773
LOC101070643	LOC101073582	ENSTRUP00000043685	ENSTRUP00000020498	E1A binding protein p300 a.	Nuclear receptor subfamily 1, group H, member 5.	0.499
LOC101070643	LOC101073984	ENSTRUP00000043685	ENSTRUP00000033022	E1A binding protein p300 a.	CREB binding protein a.	0.991
LOC101070643	LOC101077966	ENSTRUP00000043685	ENSTRUP00000023904	E1A binding protein p300 a.	Nuclear receptor coactivator 3.	0.727
LOC101070643	carm1	ENSTRUP00000043685	ENSTRUP00000050178	E1A binding protein p300 a.	Coactivator-associated arginine methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.885
LOC101070643	esr1	ENSTRUP00000043685	ENSTRUP00000078857	E1A binding protein p300 a.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.786