STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cgrrf1Cell growth regulator with ring finger domain 1. (396 aa)    
Predicted Functional Partners:
ankle2
Ankyrin repeat and LEM domain containing 2.
    
 
 0.707
rnf170
Ring finger protein 170.
      
 0.646
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
      
 0.645
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
      
 0.595
rnf19b
RBR-type E3 ubiquitin transferase.
    
 0.591
lsg1
Large 60S subunit nuclear export GTPase 1.
      
 0.568
RNF5
RING-type domain-containing protein.
      
 0.566
rnf185
Ring finger protein 185.
      
 0.566
LOC101062733
Zmp:0000000662.
    
 
 0.551
rnf145
Ring finger protein 145b.
    
 
 0.551
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.