STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tspan7Tetraspanin. (244 aa)    
Predicted Functional Partners:
ENSTRUP00000013870
Protein interacting with prkca 1.
     
 0.635
LOC101074890
Protein interacting with prkca 1.
     
 0.635
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
   
 
 0.481
H2UVK4_TAKRU
Glutamate receptor interacting protein 2b.
    
  0.449
igsf8
Immunoglobulin superfamily, member 8.
    
 
 0.437
ptgfrn
Uncharacterized protein.
    
 
 0.435
grip1
Glutamate receptor interacting protein 1.
     
 0.412
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.