Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077658BZIP domain-containing protein. (411 aa)    
Predicted Functional Partners:
stk40
Serine/threonine kinase 40.
    
  0.772
fbxw11
F-box and WD repeat domain containing 11b.
    
 
 0.700
hlf
BZIP domain-containing protein.
    
 
 0.657
LOC101076015
HLF transcription factor, PAR bZIP family member b.
    
 
 0.657
ENSTRUP00000048107
Cytochrome c oxidase subunit 7C.
   
 0.649
LOC101062555
Cytochrome c oxidase subunit 4I1.
   
 0.634
LOC101080058
Cytochrome c oxidase subunit 5Ab.
   
 0.609
COX5A
Cytochrome c oxidase subunit 5A.
   
 0.609
cop1
COP1 E3 ubiquitin ligase.
    
   0.582
LOC101077666
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.575
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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