LOC101061564 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101061564

Uncharacterized protein. (283 aa)

Predicted Functional Partners:

LOC101074300

0.997

LOC101068020

0.969

LOC101066955

0.965

LOC101080086

0.737

tnfa

0.687

wdr13

0.573

tnfrsf1a

0.430

tnfrsf1a-2

0.430

LOC101073524

0.409

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101061564	LOC101066955	ENSTRUP00000024004	ENSTRUP00000054238	Uncharacterized protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.965
LOC101061564	LOC101068020	ENSTRUP00000024004	ENSTRUP00000049751	Uncharacterized protein.	CD40 ligand; Belongs to the tumor necrosis factor family.	0.969
LOC101061564	LOC101073524	ENSTRUP00000024004	ENSTRUP00000059559	Uncharacterized protein.	Tumor necrosis factor receptor superfamily member 11A isoform X2.	0.409
LOC101061564	LOC101074300	ENSTRUP00000024004	ENSTRUP00000047299	Uncharacterized protein.	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	0.997
LOC101061564	LOC101080086	ENSTRUP00000024004	ENSTRUP00000051660	Uncharacterized protein.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.737
LOC101061564	tnfa	ENSTRUP00000024004	ENSTRUP00000014387	Uncharacterized protein.	Tumor necrosis factor alpha.	0.687
LOC101061564	tnfrsf1a	ENSTRUP00000024004	ENSTRUP00000011080	Uncharacterized protein.	Tumor necrosis factor receptor superfamily member 1A.	0.430
LOC101061564	tnfrsf1a-2	ENSTRUP00000024004	ENSTRUP00000074097	Uncharacterized protein.	Tumor necrosis factor receptor superfamily, member 1a.	0.430
LOC101061564	wdr13	ENSTRUP00000024004	ENSTRUP00000056266	Uncharacterized protein.	WD repeat domain 13.	0.573
LOC101066955	LOC101061564	ENSTRUP00000054238	ENSTRUP00000024004	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.965
LOC101066955	LOC101068020	ENSTRUP00000054238	ENSTRUP00000049751	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	CD40 ligand; Belongs to the tumor necrosis factor family.	0.621
LOC101066955	LOC101073524	ENSTRUP00000054238	ENSTRUP00000059559	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily member 11A isoform X2.	0.478
LOC101066955	LOC101080086	ENSTRUP00000054238	ENSTRUP00000051660	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.699
LOC101066955	tnfa	ENSTRUP00000054238	ENSTRUP00000014387	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor alpha.	0.537
LOC101068020	LOC101061564	ENSTRUP00000049751	ENSTRUP00000024004	CD40 ligand; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.969
LOC101068020	LOC101066955	ENSTRUP00000049751	ENSTRUP00000054238	CD40 ligand; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.621
LOC101068020	LOC101073524	ENSTRUP00000049751	ENSTRUP00000059559	CD40 ligand; Belongs to the tumor necrosis factor family.	Tumor necrosis factor receptor superfamily member 11A isoform X2.	0.556
LOC101068020	LOC101074300	ENSTRUP00000049751	ENSTRUP00000047299	CD40 ligand; Belongs to the tumor necrosis factor family.	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	0.958
LOC101068020	LOC101080086	ENSTRUP00000049751	ENSTRUP00000051660	CD40 ligand; Belongs to the tumor necrosis factor family.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.632
LOC101068020	tnfa	ENSTRUP00000049751	ENSTRUP00000014387	CD40 ligand; Belongs to the tumor necrosis factor family.	Tumor necrosis factor alpha.	0.484