Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
micall1MICAL-like 1a. (898 aa)    
Predicted Functional Partners:
cask
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
  0.579
acap2
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2.
   
 
 0.522
dars2
Aspartyl-tRNA synthetase 2, mitochondrial.
    
   0.518
rab12
RAB12, member RAS oncogene family.
    
 0.479
ocrl
OCRL inositol polyphosphate-5-phosphatase.
      
 0.475
TPM4
Uncharacterized protein; Belongs to the tropomyosin family.
   
 0.453
LOC101070032
Uncharacterized protein.
   
 0.453
TPM1
Tropomyoshin1-1; Belongs to the tropomyosin family.
   
 0.453
tpm4
Tropomyosin4-2; Belongs to the tropomyosin family.
   
 0.453
LOC101072712
Myocardial zonula adherens protein.
   
 0.453
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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