Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LOC101070833SMU1 DNA replication regulator and spliceosomal factor b. (506 aa)    
Predicted Functional Partners:
ik
IK cytokine.
   
 0.956
mfap1
Microfibril associated protein 1.
   
 0.946
zmat2
Zinc finger, matrin-type 2.
    
 0.881
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.825
wbp4
Matrin-type domain-containing protein.
    
 0.810
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.796
wbp11
Uncharacterized protein.
    
 0.787
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 0.781
UBL5
Ubiquitin like 5.
    
 0.780
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
  0.771
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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