STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tdrd9Tudor domain containing 9. (1212 aa)    
Predicted Functional Partners:
piwil1
Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.
   
 0.971
tdrd5
Uncharacterized protein.
   
0.918
ENSTRUP00000052855
Tudor domain containing 12.
   
 0.846
asz1
Uncharacterized protein.
    
 0.823
LOC101073189
Uncharacterized protein.
   
 0.822
LOC101077791
Uncharacterized protein.
   
 0.806
henmt1
HEN methyltransferase 1.
     
 0.791
tdrd1
Tudor domain containing 1.
   
 0.778
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.776
fkbp6
Peptidylprolyl isomerase.
   
 0.773
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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