Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101064645Si:ch211-176g13.8. (755 aa)    
Predicted Functional Partners:
LOC101077791
Uncharacterized protein.
   
 0.727
LOC101071646
Uncharacterized protein.
   
 0.714
wasl
WASP like actin nucleation promoting factor a.
   
 0.714
LOC101069458
WASP like actin nucleation promoting factor b.
   
 0.714
itsn1
Intersectin 1 (SH3 domain protein).
   
 0.594
LOC101073405
Vasotocin-neurophysin VT 1; Vasotocin is probably an antidiuretic hormone.
      
 0.583
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
      
 0.582
mlst8
MTOR associated protein, LST8 homolog (S. cerevisiae).
    
   0.569
Rangrf
Ran guanine nucleotide release factor.
      
 0.561
PDZD7
PDZ domain-containing protein.
    
  0.537
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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