Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
rmdn1Regulator of microtubule dynamics 1. (307 aa)    
Predicted Functional Partners:
cdv3
Carnitine deficiency-associated gene expressed in ventricle 3.
      
 0.701
cnih4
Cornichon family AMPA receptor auxiliary protein 4.
    
 
 0.647
LOC101079624
Glycerol-3-phosphate acyltransferase 2, mitochondrial.
  
 
 0.572
gpam
Glycerol-3-phosphate acyltransferase 1, mitochondrial.
  
 
 0.537
lpcat4
Lysophosphatidylcholine acyltransferase 4.
     
 0.502
LOC101079283
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
     
 0.501
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
  
  
 0.496
LOC101073082
Phosphate cytidylyltransferase 2, ethanolamine.
 
    
 0.476
PCYT2
CTP_transf_like domain-containing protein.
 
    
 0.470
mboat2
Membrane bound O-acyltransferase domain containing 2a; Belongs to the membrane-bound acyltransferase family.
   
 0.452
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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