sil1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

sil1

SIL1 nucleotide exchange factor. (460 aa)

Predicted Functional Partners:

hyou1

0.993

hspa5

0.985

fau

0.935

rpl23a

0.928

rpl13a

0.926

rpl11

0.925

rpl9

0.922

mrpl12

0.910

mrpl17

0.910

rpl23

0.909

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fau	hspa5	ENSTRUP00000029977	ENSTRUP00000088063	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.444
fau	rpl11	ENSTRUP00000029977	ENSTRUP00000055933	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.998
fau	rpl13a	ENSTRUP00000029977	ENSTRUP00000073743	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
fau	rpl23	ENSTRUP00000029977	ENSTRUP00000065488	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.998
fau	rpl23a	ENSTRUP00000029977	ENSTRUP00000068150	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
fau	rpl9	ENSTRUP00000029977	ENSTRUP00000057540	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L9.	0.998
fau	sil1	ENSTRUP00000029977	ENSTRUP00000024174	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	SIL1 nucleotide exchange factor.	0.935
hspa5	fau	ENSTRUP00000088063	ENSTRUP00000029977	Heat shock protein 5; Belongs to the heat shock protein 70 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.444
hspa5	hyou1	ENSTRUP00000088063	ENSTRUP00000009688	Heat shock protein 5; Belongs to the heat shock protein 70 family.	Hypoxia up-regulated 1.	0.997
hspa5	sil1	ENSTRUP00000088063	ENSTRUP00000024174	Heat shock protein 5; Belongs to the heat shock protein 70 family.	SIL1 nucleotide exchange factor.	0.985
hyou1	hspa5	ENSTRUP00000009688	ENSTRUP00000088063	Hypoxia up-regulated 1.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.997
hyou1	sil1	ENSTRUP00000009688	ENSTRUP00000024174	Hypoxia up-regulated 1.	SIL1 nucleotide exchange factor.	0.993
mrpl12	mrpl17	ENSTRUP00000055408	ENSTRUP00000059125	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L17.	0.995
mrpl12	rpl11	ENSTRUP00000055408	ENSTRUP00000055933	Mitochondrial ribosomal protein L12.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.978
mrpl12	rpl13a	ENSTRUP00000055408	ENSTRUP00000073743	Mitochondrial ribosomal protein L12.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.975
mrpl12	rpl23	ENSTRUP00000055408	ENSTRUP00000065488	Mitochondrial ribosomal protein L12.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.984
mrpl12	rpl23a	ENSTRUP00000055408	ENSTRUP00000068150	Mitochondrial ribosomal protein L12.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.978
mrpl12	rpl9	ENSTRUP00000055408	ENSTRUP00000057540	Mitochondrial ribosomal protein L12.	Ribosomal protein L9.	0.978
mrpl12	sil1	ENSTRUP00000055408	ENSTRUP00000024174	Mitochondrial ribosomal protein L12.	SIL1 nucleotide exchange factor.	0.910
mrpl17	mrpl12	ENSTRUP00000059125	ENSTRUP00000055408	Mitochondrial ribosomal protein L17.	Mitochondrial ribosomal protein L12.	0.995