Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ankzf1Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1. (720 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
   
 0.940
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.839
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.782
SPATA5
ATPase family protein 2 homolog.
   
 0.782
elac1
ElaC ribonuclease Z 1.
   
  
 0.725
ube4a
Ubiquitination factor E4A (UFD2 homolog, yeast).
    
 
 0.722
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
    
 
 0.722
eif6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
   0.706
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.676
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.651
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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