c11h19orf54 protein (Takifugu rubripes) - STRING interaction network

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[Homology]

Score

c11h19orf54

Zgc:153119. (307 aa)

Predicted Functional Partners:

lsm5

0.982

lsm6

0.979

snrpd2

0.973

lsm7

0.969

lsm8

0.967

lsm4

0.963

LOC101069239

0.963

snrpg

0.956

snrpf

0.934

snrpd1

0.930

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101069239	c11h19orf54	ENSTRUP00000065009	ENSTRUP00000024325	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Zgc:153119.	0.963
LOC101069239	lsm4	ENSTRUP00000065009	ENSTRUP00000048509	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LOC101069239	lsm5	ENSTRUP00000065009	ENSTRUP00000045498	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LOC101069239	lsm6	ENSTRUP00000065009	ENSTRUP00000055779	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
LOC101069239	lsm7	ENSTRUP00000065009	ENSTRUP00000051649	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LOC101069239	lsm8	ENSTRUP00000065009	ENSTRUP00000082905	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.941
LOC101069239	snrpd1	ENSTRUP00000065009	ENSTRUP00000022569	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.740
LOC101069239	snrpd2	ENSTRUP00000065009	ENSTRUP00000071624	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein Sm D2.	0.922
LOC101069239	snrpf	ENSTRUP00000065009	ENSTRUP00000038228	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein polypeptide F.	0.867
LOC101069239	snrpg	ENSTRUP00000065009	ENSTRUP00000009580	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein G.	0.524
c11h19orf54	LOC101069239	ENSTRUP00000024325	ENSTRUP00000065009	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.963
c11h19orf54	lsm4	ENSTRUP00000024325	ENSTRUP00000048509	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.963
c11h19orf54	lsm5	ENSTRUP00000024325	ENSTRUP00000045498	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.982
c11h19orf54	lsm6	ENSTRUP00000024325	ENSTRUP00000055779	Zgc:153119.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.979
c11h19orf54	lsm7	ENSTRUP00000024325	ENSTRUP00000051649	Zgc:153119.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.969
c11h19orf54	lsm8	ENSTRUP00000024325	ENSTRUP00000082905	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.967
c11h19orf54	snrpd1	ENSTRUP00000024325	ENSTRUP00000022569	Zgc:153119.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.930
c11h19orf54	snrpd2	ENSTRUP00000024325	ENSTRUP00000071624	Zgc:153119.	Small nuclear ribonucleoprotein Sm D2.	0.973
c11h19orf54	snrpf	ENSTRUP00000024325	ENSTRUP00000038228	Zgc:153119.	Small nuclear ribonucleoprotein polypeptide F.	0.934
c11h19orf54	snrpg	ENSTRUP00000024325	ENSTRUP00000009580	Zgc:153119.	Small nuclear ribonucleoprotein G.	0.956