Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dync2li1Dynein, cytoplasmic 2, light intermediate chain 1. (406 aa)    
Predicted Functional Partners:
wdr34
WD repeat domain 34.
    
 0.997
tctex1d2
Uncharacterized protein.
   
 0.983
DYNLRB1
Dynein light chain roadblock.
    
 0.962
Dync2h1
Uncharacterized protein.
   
 0.940
DYNC1I1
WD_REPEATS_REGION domain-containing protein.
    
 0.927
LOC101061077
Tctex1 domain containing 1.
   
 0.916
ift88
Intraflagellar transport 88 homolog.
   
 0.913
LOC101068784
Uncharacterized protein.
     
 0.910
LOC101078390
Dynein light chain.
    
 0.901
LOC101063088
Dynein light chain.
    
 0.901
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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