Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101061072Uncharacterized protein. (392 aa)    
Predicted Functional Partners:
LOC101063222
RING-type domain-containing protein.
      
 0.712
LOC101067553
PNPLA domain-containing protein.
      
 0.710
LOC101069021
Peripherin 2a (retinal degeneration, slow).
      
 0.663
LOC101074421
Retinal outer segment membrane protein 1a.
      
 0.606
ENSTRUP00000076723
annotation not available
      
 0.606
pou4f3
POU domain protein.
      
 0.599
LOC101071873
Peripherin 2b (retinal degeneration, slow).
      
 0.599
LOC101073968
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.511
ppp1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.511
pnpla8
Patatin-like phospholipase domain containing 8.
      
 0.509
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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