STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubac2UBA domain containing 2. (353 aa)    
Predicted Functional Partners:
faf2
Fas associated factor family member 2.
    
 
 0.973
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.956
emc1
ER membrane protein complex subunit 1.
    
 
 0.895
emc3
ER membrane protein complex subunit 3; Belongs to the EMC3 family.
   
 
 0.854
amfr
Autocrine motility factor receptor b.
    
 
 0.853
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.850
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.841
LOC101078521
ER membrane protein complex subunit 3; Belongs to the EMC3 family.
   
 
 0.827
TMEM43
Uncharacterized protein.
    
 
 0.813
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.808
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.