Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LAMP5Lysosomal associated membrane protein family member 5. (273 aa)    
Predicted Functional Partners:
sncg
Gamma-synuclein; Belongs to the synuclein family.
   
 
 0.618
cplx3
Uncharacterized protein.
      
 0.537
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.460
nprl2
NPR2 like, GATOR1 complex subunit.
    
 
 0.456
nprl3
NPR3-like, GATOR1 complex subunit.
    
 
 0.439
wdr24
WD repeat domain 24.
    
 
 0.415
wdr59
WD repeat domain 59.
    
   0.408
kptn
Kaptin (actin binding protein).
    
   0.408
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
   0.408
depdc5
DEP domain containing 5.
    
   0.408
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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