Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fgc6ast2Metalloendopeptidase. (279 aa)    
Predicted Functional Partners:
oaz2
Uncharacterized protein.
      
 0.618
fggy
FGGY carbohydrate kinase domain containing.
     
 0.608
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
      
 0.600
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
     
 0.588
LOC101067576
Si:ch211-157b11.8.
      
 0.495
HYAL2
Hyaluronidase.
      
 0.476
HYAL2-2
Hyaluronidase.
      
 0.476
LOC101072897
Growth differentiation factor 10b.
    
 
 0.467
GDF10
Growth differentiation factor 10.
    
 
 0.467
chrd
Chordin.
    
 
 0.421
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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