LOC101066798 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101066798

Uncharacterized protein. (417 aa)

Predicted Functional Partners:

eloc

0.868

uba52

0.842

rps27a

0.819

cul2

0.798

LOC101070508

0.692

LOC101068670

0.692

ENSTRUP00000057853

0.669

Ubb

0.669

NEMF

0.635

appbp2

0.632

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000057853	LOC101066798	ENSTRUP00000057853	ENSTRUP00000024496	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.669
ENSTRUP00000057853	LOC101068670	ENSTRUP00000057853	ENSTRUP00000049263	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.551
ENSTRUP00000057853	LOC101070508	ENSTRUP00000057853	ENSTRUP00000019715	Ubiquitin-like domain-containing protein.	Elongin-B isoform X1.	0.551
ENSTRUP00000057853	NEMF	ENSTRUP00000057853	ENSTRUP00000033041	Ubiquitin-like domain-containing protein.	Nuclear export mediator factor.	0.493
ENSTRUP00000057853	cul2	ENSTRUP00000057853	ENSTRUP00000080938	Ubiquitin-like domain-containing protein.	Cullin 2; Belongs to the cullin family.	0.518
ENSTRUP00000057853	eloc	ENSTRUP00000057853	ENSTRUP00000081012	Ubiquitin-like domain-containing protein.	Elongin C paralog a; Belongs to the SKP1 family.	0.672
ENSTRUP00000057853	rps27a	ENSTRUP00000057853	ENSTRUP00000027679	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.957
ENSTRUP00000057853	uba52	ENSTRUP00000057853	ENSTRUP00000009801	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.965
LOC101066798	ENSTRUP00000057853	ENSTRUP00000024496	ENSTRUP00000057853	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.669
LOC101066798	LOC101068670	ENSTRUP00000024496	ENSTRUP00000049263	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.692
LOC101066798	LOC101070508	ENSTRUP00000024496	ENSTRUP00000019715	Uncharacterized protein.	Elongin-B isoform X1.	0.692
LOC101066798	NEMF	ENSTRUP00000024496	ENSTRUP00000033041	Uncharacterized protein.	Nuclear export mediator factor.	0.635
LOC101066798	Ubb	ENSTRUP00000024496	ENSTRUP00000085926	Uncharacterized protein.	LOW QUALITY PROTEIN: polyubiquitin-B.	0.669
LOC101066798	appbp2	ENSTRUP00000024496	ENSTRUP00000018291	Uncharacterized protein.	Amyloid beta precursor protein (cytoplasmic tail) binding protein 2.	0.632
LOC101066798	cul2	ENSTRUP00000024496	ENSTRUP00000080938	Uncharacterized protein.	Cullin 2; Belongs to the cullin family.	0.798
LOC101066798	eloc	ENSTRUP00000024496	ENSTRUP00000081012	Uncharacterized protein.	Elongin C paralog a; Belongs to the SKP1 family.	0.868
LOC101066798	rps27a	ENSTRUP00000024496	ENSTRUP00000027679	Uncharacterized protein.	Ribosomal protein S27a.	0.819
LOC101066798	uba52	ENSTRUP00000024496	ENSTRUP00000009801	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.842
LOC101068670	ENSTRUP00000057853	ENSTRUP00000049263	ENSTRUP00000057853	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.551
LOC101068670	LOC101066798	ENSTRUP00000049263	ENSTRUP00000024496	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.692