Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ablim2Actin binding LIM protein family, member 2. (700 aa)    
Predicted Functional Partners:
SH3TC1
SH3 domain and tetratricopeptide repeats 1.
      
 0.774
KDM1B
Lysine demethylase 1B.
    
   0.731
LOC101066211
TLC domain containing 3A.
      
 0.637
smtnl2
Smoothelin, like.
      
 0.637
add1
Adducin 1 (alpha).
   
 0.607
LOC101064298
Uncharacterized protein.
   
 0.607
LOC100462937
Adducin 2 (beta).
   
 0.607
meaf6
MYST/Esa1-associated factor 6.
      
 0.567
hddc2
HD domain containing 2.
      
 0.548
LOC101065834
Rho guanine nucleotide exchange factor (GEF) 39.
      
 0.520
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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