m6pr protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

m6pr

Uncharacterized protein. (274 aa)

Predicted Functional Partners:

igf2r

0.998

gga3

0.888

LOC101080215

0.888

LOC101061415

0.867

vti1a

0.857

plin2

0.722

LOC101075544

0.722

vamp7

0.690

GCC2

0.683

LOC101071071

0.669

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCC2	LOC101075544	ENSTRUP00000006069	ENSTRUP00000085000	GRIP domain-containing protein.	Perilipin; Belongs to the perilipin family.	0.412
GCC2	igf2r	ENSTRUP00000006069	ENSTRUP00000023173	GRIP domain-containing protein.	Insulin-like growth factor 2 receptor.	0.663
GCC2	m6pr	ENSTRUP00000006069	ENSTRUP00000024647	GRIP domain-containing protein.	Uncharacterized protein.	0.683
GCC2	plin2	ENSTRUP00000006069	ENSTRUP00000009946	GRIP domain-containing protein.	Uncharacterized protein.	0.412
GCC2	vti1a	ENSTRUP00000006069	ENSTRUP00000032608	GRIP domain-containing protein.	Vesicle transport through interaction with t-SNAREs 1A.	0.628
LOC101061415	m6pr	ENSTRUP00000085053	ENSTRUP00000024647	Arylsulfatase A.	Uncharacterized protein.	0.867
LOC101071071	igf2r	ENSTRUP00000076463	ENSTRUP00000023173	Vesicle-associated membrane protein 8 (endobrevin).	Insulin-like growth factor 2 receptor.	0.612
LOC101071071	m6pr	ENSTRUP00000076463	ENSTRUP00000024647	Vesicle-associated membrane protein 8 (endobrevin).	Uncharacterized protein.	0.669
LOC101071071	vamp7	ENSTRUP00000076463	ENSTRUP00000054967	Vesicle-associated membrane protein 8 (endobrevin).	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.919
LOC101071071	vti1a	ENSTRUP00000076463	ENSTRUP00000032608	Vesicle-associated membrane protein 8 (endobrevin).	Vesicle transport through interaction with t-SNAREs 1A.	0.974
LOC101075544	GCC2	ENSTRUP00000085000	ENSTRUP00000006069	Perilipin; Belongs to the perilipin family.	GRIP domain-containing protein.	0.412
LOC101075544	igf2r	ENSTRUP00000085000	ENSTRUP00000023173	Perilipin; Belongs to the perilipin family.	Insulin-like growth factor 2 receptor.	0.787
LOC101075544	m6pr	ENSTRUP00000085000	ENSTRUP00000024647	Perilipin; Belongs to the perilipin family.	Uncharacterized protein.	0.722
LOC101080215	igf2r	ENSTRUP00000032771	ENSTRUP00000023173	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Insulin-like growth factor 2 receptor.	0.910
LOC101080215	m6pr	ENSTRUP00000032771	ENSTRUP00000024647	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Uncharacterized protein.	0.888
gga3	igf2r	ENSTRUP00000027784	ENSTRUP00000023173	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Insulin-like growth factor 2 receptor.	0.910
gga3	m6pr	ENSTRUP00000027784	ENSTRUP00000024647	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Uncharacterized protein.	0.888
igf2r	GCC2	ENSTRUP00000023173	ENSTRUP00000006069	Insulin-like growth factor 2 receptor.	GRIP domain-containing protein.	0.663
igf2r	LOC101071071	ENSTRUP00000023173	ENSTRUP00000076463	Insulin-like growth factor 2 receptor.	Vesicle-associated membrane protein 8 (endobrevin).	0.612
igf2r	LOC101075544	ENSTRUP00000023173	ENSTRUP00000085000	Insulin-like growth factor 2 receptor.	Perilipin; Belongs to the perilipin family.	0.787