STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074426BTB (POZ) domain containing 3a. (472 aa)    
Predicted Functional Partners:
cul3
Cullin 3a; Belongs to the cullin family.
   
 0.677
cops3
COP9 signalosome subunit 3.
    
  0.609
cops2
COP9 signalosome subunit 2.
   
  0.606
arfgef1-2
ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited).
    
  0.585
cacul1
Cullin domain-containing protein; Belongs to the cullin family.
   
 0.569
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 
  0.564
ppp1r42
Protein phosphatase 1, regulatory subunit 42.
    
  0.560
cops8
COP9 signalosome subunit 8.
    
  0.533
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
  0.522
COPS6
COP9 signalosome subunit 6.
    
  0.515
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.