Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101075302Ras homolog family member F. (210 aa)    
Predicted Functional Partners:
LOC101077791
Uncharacterized protein.
    
 0.859
rasl11b
RAS-like, family 11, member B.
    
 0.828
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.789
basp1
Brain abundant, membrane attached signal protein 1.
     
  0.761
LOC101066528
Niban apoptosis regulator 2a.
    
 0.761
ect2
Epithelial cell transforming 2.
    
 0.755
dock4
Dedicator of cytokinesis 4b; Belongs to the DOCK family.
   
 0.733
H2TLH5_TAKRU
Uncharacterized protein.
   
 0.728
arhgap1
Rho GTPase activating protein 1.
    
 0.714
SYDE2
Synapse defective Rho GTPase homolog 2.
   
 0.712
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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